Todos for the BioBrick to PoBoL conversion
1) Get the DNA and Sequence Info (straightforward from or partsregistry DAS)
2) Set up the webpage
3) Have a OWL validator set up
After that we need to figure out how are we going to figure out what part is a promoter, and what repressor or activation sites it has (if any). [This is for main goal for converting a schematic to biobrick.]
1 comment:
I am commenting my own post... Hahaha. Well not exactly. Here's what Michal pointed out for the validation part
[Quote]
constancy = consistency
I would strongly encourage you to use a OWL Validator to check your
output for constancy and conformity to OWL guidelines.
on the web http://www.mindswap.org/2003/pellet/demo.shtml (seems to
work, 2003? it seems old)
the http://www.mygrid.org.uk/OWL/Validator (seems to be offline, its
the one i used in the past)
the current version of Pellet is available at http://pellet.owldl.com/
the docs say something like:
"Running Pellet (Command Line Version)
Pellet comes with a simple command line interface to demonstrate some
of its capabilities. This program provides options to find the
ontology level (Lite, DL, FULL), check consistency of an ontology,
find unsatisfiable concepts,...
java -jar lib/pellet.jar
Running this command will print the options available."
If something in PoBol fails just change it so it is correct and update
the group on the google code page.
[/Quote]
Post a Comment